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Bold fonts indicate current CNTC Fellows. Mentor names are underlined. Italics indicate Fellows of the NCI-cofunded NSMS IGERT, the precursor to the CNTC.

Publications 2014

  1. S.L. Schwartz, Q. Yan, C.S. Telmer, K.A. Lidke, M.P. Bruchez, D.S. Lidke. Fluorogen Activating Proteins Provide Tunable Labeling Densities for Tracking FcεRI Independent of IgE. ACS Chemical Biology. Accepted.

  2. Q. Yan*, S.L. Schwartz*, S. Maji, F. Huang, C. Szent-Gyorgyi, D.S. Lidke, K.A. Lidke, M.P. Bruchez. Localization microscopy using noncovalent fluorogen activation by genetically encoded fluorogen-activating proteins. Chem Phys Chem. 2014 Mar 17. 15(4):687-95. doi: 10.1002.

  3. Sebastián E. Godoy, David A. Ramirez, Stephen A. Myers, Greg von Winckel, Sanchita Krishna, Marianne Berwick, R. Steven Padilla, Pradeep Sen and Sanjay Krishna, "Dynamic Infrared Imaging for Skin Cancer Screening," Infrared Physics & Technology Journal. Accepted.

  4. McBride, A.A., Price, D.N., Anton, M., MacKenzie, D.A., Norenberg, J.P., Thompson, T.A., Muttil, P. "A Longitudinal, Orthotopic Mouse Imaging Model using Modified A549-hNIS Lung Adenocarcinoma Cells and SPECT/CT Imaging." Submitted to the Journal of Nuclear Medicine.

  5. McBride, A.A., Price, D.N., Lamoureux, L.R., Muttil, P. "Pulmonary targeting and delivery of magnetically responsive dry powder nano-in-microparticles" Submitted to the Journal of Controlled Release.

  6. Jie Lu, Helen J. Hathaway, Melanie E. Royce, Eric R. Prossnitz, Yubin Miao. Introduction of D-Phenylalanine enhanced the receptor binding affinities of gonadotropin-releasing hormone peptides. Bioorganic & Medicinal Chemistry Letters 2014;24:725-730. PMCID: PMC3924789.
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  7. M. R. Lakin, R. Petersen, K. E. Gray and A. Phillips. Abstract modelling of tethered DNA circuits. In S. Murata and S. Kobayashi (eds.), Proceedings of the 20th International Conference on DNA Computing and Molecular Programming, Lecture Notes in Computer Science, volume 8727, pages 132-147, Springer-Verlag, 2014.
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  8. M. R. Lakin and D. Stefanovic, Pattern formation by spatially organized approximate majority reactions. In O. H. Ibarra, L. Kari and S. Kopecki (eds.), UCNC 2014, Lecture Notes in Computer Science, volume 8553, pages 254-266, Springer-Verlag, 2014.
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  9. Michelle S Itano, Matthew S Graus, Carolyn Pehlke, Michael J Wester, Ping Liu, Keith A Lidke, Nancy L Thompson, Ken Jacobson, Aaron K Neumann. Super-resolution imaging of C-type lectin spatial rearrangement within the dendritic cell plasma membrane at fungal microbe contact sites. Frontiers in Physics. In press.

  10. Brown, Carl W. III, Matthew R. Lakin, Eli K. Horwitz, M. Leigh Fanning, Hannah E. West, Darko Stefanovic, and Steven W. Graves. Signal Propagation in Multi-Layer DNAzyme Cascades using Structured Chimeric Substrates. Angewandte Chemie International Edition 53(28), 7183-7187 (2014). doi: 10.1002/anie.201402691
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  11. Brown, C. W. III, M. R. Lakin, D. Stefanovic and S. W. Graves, Catalytic molecular logic devices by DNAzyme displacement. ChemBioChem, volume 15, pages 950-954, 2014. (This paper was selected to appear on the journal cover.)

  12. Graus MS, Pehlke C, Wester MJ, Davidson LB, Steinberg SL, Aaron K. Neumann. (2014) A New Tool to Quantify Receptor Recruitment to Cell Contact Sites during Host-Pathogen Interaction. PLoS Comput Biol 10(5): e1003639. doi:10.1371/journal.pcbi.1003639
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  13. Kerketta, R., Chuang Y.-L., Brocato, T. A., Butner, J., Day, A., Dogra, P., Xu, R., Koay, E. J., Shen, H., Curley, S. A., Wang, Z., Cristini, V., "Mathematical modeling of drug transport to determine chemotherapeutic outcomes in cancer patients". Physical Biology, special issue on Transport Oncophysics. (invited manuscript in preparation).

  14. Paskaleva, P, S. E. Godoy, W-Y Jang, S. C. Bender, S. Krishna, and M. M. Hayat, "Model-based Edge Detector for Spectral Imagery Using Sparse Spatio-spectral Masks," IEEE Trans. Image Processing, accepted on January 2014. In press

  15. Wang, Z., Butner, J., Kerketta, R., Cristini, V., Deisboeck, S. T., "Simulating Cancer Growth with Multiscale Agent-Based Modeling," Seminars in Cancer Biology. Semin Cancer Biol. 2014 May 1. pii: S1044-579X(14)00049-2. doi: 10.1016/j.semcancer.2014.04.001. [Epub ahead of print]
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  16. Wang, Z, Kerketta, R, Chuang, YL, and Cristini, V. Development of a Diffusion-Based Mathematical Model for Predicting Chemotherapy Effects. Conf Proc IEEE Eng Med Biol Soc. Chicago, IL, 2014.

Publications 2013

  1. K. van den Dries, S.L. Schwartz, J. Byars, M.B. Meddens, M. Bolomini-Vittori, D.S. Lidke, C.G. Figdor, K.A. Lidke, A. Cambi. Dual-color superresolution microscopy reveals nanoscale organization of mechanosensory podosomes. Mol Biol Cell. 2013 Jul. 24(13):2112-23. doi: 10.1091

  2. Meng, H.; Zhao, Y.; Dong, J.; Xue, M.; Lin, Y.-S.; Ji, Z.; Mai, W. X.; Zhang, H.; Chang, C. H.; Brinker, C. J.; Zink, J. I.; Nel, A. E. Two Wave Nanotherapy to Target the Stroma and Optimize Gemcitabine Delivery to a Human Pancreatic Cancer Model in Mice, ACS Nano 2013, 7, 10048-10065. (PMID number: 24143858)

  3. Tian, Z.-B., T. Schuler-Sandy, S. E. Godoy, H. S. Kim and S. Krishna, "High-operating-temperature MWIR detectors using type II superlattices," Infrared Remote Sensing and Instrumentation XXI, Volume 8867, 2013

  4. Tian, Z.-B., T. Schuler-Sandy, S. E. Godoy, H. S. Kim, J. Montoya and S. Krishna, "Mid-wave infrared interband cascade photodetectors and focal plane arrays based on InAs/GaSb superlattices," 2013 IEEE Photonics Conference (IPC), pp.598,599, 2013

  5. Tian, Z.-B., T. Schuler-Sandy, S. E. Godoy, H. S. Kim, J. Montoya, S. Myers, B. Klein, E. Plis and S. Krishna, "Quantum-engineered mid-infrared type-II InAs/GaSb superlattice photodetectors for high temperature operations," Proc. SPIE 8704, Infrared Technology and Applications XXXIX, 87041T, 2013

  6. Townson, J. L.*; Lin, Y.-S.*; Agola, J. O.; Carnes, E. C.; Leong, H. S.; Lewis, J. D.; Haynes, C. L.; Brinker, C. J. Re-Examining the Size/Charge Paradigm: Differing In Vivo Characteristics of Size and Charge-Matched Mesoporous Silica Nanoparticles, J. Am. Chem. Soc. 2013, 135, 16030-16033. (*contributed equally, PMID number: 24107191)
  7. McBride, AA, DN Price, LR Lamoureux, AA Elmaoued, JM Vargas, NL Adolphi and P Muttil. 2013. Preparation and Characterization of Novel Magnetic Nano-in-Microparticles for Site-Specific Pulmonary Drug Delivery. Mol. Pharmaceutics 10, 3574−3581
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  8. Townson, J. L.*, Lin, Y.-S.*, Agola, J. O., Carnes, E. C., Leong, H. S., Lewis, J. D., Haynes, C. L., Brinker, C. J. 2013. Re-Examining the Size/Charge Paradigm: Differing In Vivo Characteristics of Size and Charge-Matched Mesoporous Silica Nanoparticles, J. Am. Chem. Soc. 135, 16030-16033. (*contributed equally, PMID number: 24107191).
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  9. Meng, H., Zhao, Y., Dong, J., Xue, M., Lin, Y.-S., Ji, Z., Mai, W. X., Zhang, H., Chang, C. H., Brinker, C. J., Zink, J. I., Nel, A. E. 2013. Two Wave Nanotherapy to Target the Stroma and Optimize Gemcitabine Delivery to a Human Pancreatic Cancer Model in Mice, ACS Nano 7, in press

  10. Qi Jin and Fu-Sen Liang. 2013. Chemical Tools for Spatiotemporal Regulation of microRNAs. Organic Chem Curr Res 2:e121
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  11. Matthew R. Lakin, Andrew Phillips and Darko Stefanovic, 2013. Modular verification of DNA strand dis- placement networks via serializability analysis. In D. Soloveichik and B. Yurke (eds.), Proceedings of the 19th International Conference on DNA Computing and Molecular Programming, Lecture Notes in Computer Science vol. 8141, pages 133–146. Springer-Verlag.
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  12. JL Townson, Y-S Lin, JO Agola, EC Carnes, HS Leong, JD Lewis, CL Haynes and CJ Brinker. 2013. Re-examining the Size/Charge Paradigm: Differing in Vivo Characteristics of Size- and Charge-Matched Mesoporous Silica Nanoparticles. Journal of the American Chemical Society ASAP.

  13. Mara P. Steinkamp, Kimberly Kanigel Winner, Suzy Davies, Carolyn Muller, Yong Zhang, Robert M. Hoffman, Abbas Shirinifard, Melanie Moses, Yi Jiang and Bridget S. Wilson. 2013. "Ovarian tumor attachment, invasion and vascularization reflect unique microenvironments in the peritoneum: Insights from xenograft and mathematical models". Frontiers in Oncology: Molecular and Cellular Oncology 3, Article 97, 1-18
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  14. McBride, A.A., Muttil, P. 2013. A Pilot study Targeting Nano-in-Microparticles (NIMs) in Rat Lungs Ex Vivo. In Respiratory Drug Delivery Davis Healthcare International Publishing, LCC. River Grove, IL. R.N. Dalby and J. Cone, editors.
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  15. J. Hautmann, S. E. Godoy, P. Marshik, R. Chand, J. McConville, S. Krishna, S. Krishna, and P. Muttil 2013. "Effect of Time Between Actuation on the Dose Variability for Three Metered Dose Inhalers," In Respiratory Drug Delivery Davis Healthcare International Publishing, LCC. River Grove, IL. R.N. Dalby and J. Cone, editors. In Press.
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Publications 2012

  1. Jianquan Yang, Jie Lu, Yubin Miao. Structural modification on the Lys linker enhanced tumor to kidney uptake ratios of Tc-99m-labeled RGD-conjugated alpha-MSH hybrid peptides. Molecular Pharmaceutics 2012;9:1418-1424

  2. S.E. Godoy, M.M. Hayat, W.-Y. Jang and S. Krishna, 2012. "Classifier-enhanced algorithm for compressive spatio-spectral edge detection," 2012 IEEE Photonics Conference (IPC), 587-588.
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  3. Ajit V. Barve, , Saumya Sengupta, Jun Oh Kim, John Montoya,Brianna Klein, Mohammad Ali Shirazi, Marziyeh Zamiri, Yagya D. Sharma, Sourav Adhikary, Sebastián E. Godoy, Woo-Yong Jang, Glauco R. C. Fiorante, Subhananda Chakrabarti, and Sanjay Krishna. 2012. "Barrier Selection Rules for Quantum Dots-in-a-Well Infrared Photodetector." IEEE Journal of Quantum Electronics 48: 1243-1251.
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  4. Edwards, B. S., Zhu, J., Graves, S. W. et al, 2012. "Cluster cytometry for high-capacity bioanalysis." Cytometry Part A. 81(5): 419-29.
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  5. Bryan Kaehra, Jason L. Townson, Robin M. Kalinich, Yasmine H. Awadb, B. S. Swartzentruberc, Darren R. Dunphy, and C. Jeffrey Brinker. Cellular complexity captured in durable silica biocomposites. Proc Nat Acad Sci 109: 17336–17341.
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  6. McBride, A.A., Lamoureux, L.R., Price, D.N., Muttil, P. Novel Preparation and Characterization of Magnetic Nano-in-Microparticle Dry Powders for Directed Drug Delivery: an Application to Lung Cancer. Respiratory Drug Delivery 2012. Davis Healthcare International Publishing, LCC. River Grove, IL. 2012. R.N. Dalby, editor.
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  7. Kuethe, D.O., McBride, A.A., Altobelli, S. A, Velocity of Mist Droplets and Suspending Gas Imaged Separately. Journal of Magnetic Resonance 2012: 216; 88-93. PMID: 22361269.
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  8. Taylor RM and Sillerud LO. Paclitaxel-loaded iron platinum stealth immunomicelles are potent MRI imaging agents that prevent prostate cancer growth in a PSMA-dependent manner. International Journal of Nanomedicine. 2012:7; 4341-4352. PMID: 22915856 PMCID: PMC3419513.
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  9. Ashley CE, Carnes EC, Epler KE, Padilla DP, Phillips GK, Castillo RE, Wilkinson DC, Wilkinson BS, Burgard CA, Kalinich RM, Townson JL, Chackerian B, Willman CL, Peabody DS, Wharton W, Brinker CJ. Delivery of small interfering RNA by peptide-targeted mesoporous silica nanoparticle-supported lipid bilayers. ACS Nano.2012; 6(3):2174-88. PMID: 22309035. PMCID: PMC3332089.
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  10. Jones, EM, M Dubey, PJ Camp, BC Vernon, J Biernat, E Mandelkow, J Majewski and EY Chi. Interaction of Tau Protein with Model Lipid Membranes Induces Tau Structural Compaction and Membrane Disruption. Biochemistry 2012; 51 (12): 2539–2550. PMID: 22401494. PMCID: PMC3319454.
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  11. Robert M. Taylor, Dale L. Huber, Todd C. Monson, Victor Esch, Laurel O. Sillerud. Structural and magnetic characterization of superparamagnetic iron platinum nanoparticle contrast agents for magnetic resonance imaging. J. Vac. Sci. Technol. B, Vol. 30, No. 2, Mar/Apr 2012. PMID: 22872817. PMCID: PMC3412162 .
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Publications 2010/2011

  1. "Data compressive paradigm for multispectral sensing using tunable DWELL mid-infrared detectors." Woo-Yong Jang, Majeed M. Hayat, Sebastián E. Godoy, Payman Zarkesh-Ha, Steven C. Bender and Sanjay Krishna. 2011.Optics Express19: 19454-19472.
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  2. Muttil, P., Price, D.N, McBride, A.A. Pulmonary immunization for TB with live cell-based vaccines: the importance of the delivery route. Therapeutic Delivery 2011: 12; 1519-1522. PMID: 22833980.
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  3. Vargas, J.M., McBride, A.A., Plumley, J.B., Fichou, Y., Memon, T.A., Shah, V., Cook, N.C., Akins, B., Rivera, A.C., Smolyakov, G.A., O'Brien, J.R., Adolphi, N.A., Smyth, H.D.C, and Osiński, M. Synthesis and characterization of core∕shell Fe3O4∕ZnSe fluorescent magnetic nanoparticles. Journal Applied Physics 2012: 109; 7B536–7B5363.
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  4. Carlee E. Ashley, Eric C. Carnes, Genevieve K. Phillips, David Padilla, Paul N. Durfee, Page A. Brown, Tracey N. Hanna, Juewen Liu, Brandy Phillips, Mark B. Carter, Nick J. Carrol, Xingmao Jiang, Darren R. Dunphy, Cheryl L. Willman, Dimiter N. Petsev, Deborah G. Evans, Atul N. Parikh, Bryce Chackerian, Walker Wharton, David S. Peabody and C. Jeffrey Brinker. The targeted delivery of multicomponent cargos to cancer cells by nanoporous particle-supported lipid bilayers. Nature Materials. Nature Materials 2011; 10: 389-397. PMID: 21499315. PMCID: PMC3287066.
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  5. Carlee E. Ashley, Eric C. Carnes, Genevieve K. Phillips, Paul N. Durfee, Mekensey D. Buley, Christopher A. Lino, David P. Padilla, Brandy Phillips, Mark B. Carter, Cheryl L. Willman, C. Jeffrey Brinker, Jerri do Carmo Caldeira, Bryce Chackerian, Walker Wharton, and David S. Peabody. ACSNANO. Cell-Specific Delivery of Diverse Cargos by Bacteriophage MS2 Virus-like Particles. ACSnano 2011; 5: 5729-5745. PMID: 21615170. PMCID: PMC3144304.
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  6. Ying Wang, Emmalee M. Jones, Yanli Tang, Eunkyung Ji, Gabriel P. Lopez, Eva Y. Chi, Kirk S. Schanze and David G. Whitten. Effect of Polymer Chain Length on Membrane Perturbation Activity of Cationic Phenylene Ethynylene Oligomers and Polymers. Langmuir 2011 27 (17), 10770-10775. PMID: 21559088. PMCID: PMC3089650.
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  7. Vargas, J, McBride, A., Plumley, J., Fichou, Y., Memon, T., Shah, V., Cook, N., Akins, B., Rivera, A., Smolyakov, G., O'Brien, J., Adolphi, N., Smyth, H., Osinski, M. Synthesis and characterization of core∕shell Fe(3)O(4)∕ZnSe fluorescent magnetic nanoparticles. J Appl Phys 109, 7B536–7B5363 (2011). PMID: 21559088
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  8. Girodon, F., Steinkamp, M., Cleyrat, C., Hermouet, S., and Wilson, B. (2011). Confocal imaging studies cast doubt on nuclear localization of JAK2V617F. Blood. 118, 2633-2634. PMID: 21885612
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  9. Robert M. Taylor, Dale L. Huber, Todd C. Monson, Abdul-Mehdi S. Ali, Marco Bisoffi & Laurel O. Sillerud. Multifunctional iron platinum stealth immunomicelles: targeted detection of human prostate cancer cells using both fluorescence and magnetic resonance imaging. Journal of Nanoparticle Research. ISSN 1388-0764. J Nanopart Res DOI 10.1007/ s11051-011-0439-3. PMID: 22121333. PMCID: PMC3223933.
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  10. Taylor RM, Severns V, Brown DC, Bisoffi M, Sillerud LO. Prostate cancer targeting motifs: Expression of α(ν) β(3) , neurotensin receptor 1, prostate specific membrane antigen, and prostate stem cell antigen in human prostate cancer cell lines and xenografts. Prostate. 2011 Jul 11 [Epub ahead of print] PMID:2174875
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  11. Shalini T Low-Nam, Keith A Lidke, Patrick J Cutler, Rob C Roovers, Paul M P van Bergen en Henegouwen, Bridget S Wilson & Diane S Lidke. ErbB1 dimerization is promoted by domain co-confinement and stabilized by ligand binding. Nature Structural & Molecular Biology (2011). Published online 23 October 2011. PMID: 22020299. PMCID: PMC3210321.
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  12. Guo H, Lu Jie, Hathaway HJ, Royce ME, Prossnitz ER, Miao Y. Synthesis and evaluation of novel gonadotrophin-releasing hormone receptor-targeting peptide. Bioconjugate Chemistry 2011;22:1682-1689. PMID: 21749045. PMCID: PMC3157568.
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Publications